Tutorials

Welcome to the tutorials! These guides will teach you how to work with Lacuna.

The tutorials are self-contained Jupyter notebooks. You can run them locally or on Colab via the "Open in Colab" links provided in each tutorial.

Start with the getting started tutorial, then explore the analysis-specific guides.

• Getting started

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  Introduction to Lacuna's CLI: tutorial data, bidsify, fetch, run, check and collect.

• Regional damage

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  Measure lesion overlap with brain parcellation atlases.

• Functional lesion network mapping

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  Map functional brain circuitry linked to a lesion.

• Accelerated functional network mapping

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  Map functional brain circuitry via a fast matrix-based implementation.

• Structural lesion network mapping

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  Map structural disconnectivity using normative tractogram data.